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MedeA 3.1

By Materials Design, Inc.

MedeA 3.1 features: - VASP 6 with a dedicated GUI - A mesoscale builder for creation of coarse-grained molecules - Extensions to builders for handling coarse-grained systems (polymer builder, amorphous materials builder and thermoset builder) - Flowchart support for mechanical modification of arbitrary systems through the Deformation module - The direct simulation of emissivity - The ability to start GIBBS Monte Carlo simulations from existing configurations - Numerous PCFF+forcefield enhancements - Support for the latest version of LAMMPS - A streamlined installation and administration interface - The UNIFAC correlative simulation method - A diverse array of high throughput simulation environment updates - Numerous enhancements throughout MedeA's infrastructure support the key themes of this release:accuracy and realism Description of MedeA 3.1 new features and enhancements Builders and Editors - Mesoscale Builder: NEW builder for building coarse-grained molecules, using pre-defined beads or introducing new types of beads - Polymer Builder: ability to build coarse-grained polymers - Amorphous Builder: ability to build coarse-grained systems - Thermoset Builder: ability to build coarse-grained thermosets Engines - MedeA VASP - VASP 5.4.4 and VASP 6.1.1 executables - Dedicated VASP 6 GUI enabling easy access to newly implemented functionality of VASP 6.1.1 as listed below - Space-time based approach for the calculation of polarizibility, providing essentially cubic rather than quartic scaling with system size, facilitating the study of larger systems - Accurate energy, forces and phonon modes from adiabatic connection applying the space-time algorithm (Low Scaling ACFDT/RPA) - Automatic optimization of atom position on the ACFDT/RPA level of theory applying the space-time algorithm - Accurate energy from Moeller-Plesset perturbation theory (MP2) - Dielectric-dependent hybrid functionals (DDH/DSH) - Electron-phonon interaction from full Monte-Carlo sampling of displacements or a single-configuration (Zacharias-Giustino approach) - X-ray absorption spectroscopy (XAS) - GUI access for applying electric fields - Enhancements for NMR calculations - MedeA LAMMPS - LAMMPS 3-March 2020 - Several enhancements on existing functionality - Additional LAMMPS packages included in the build (LATTE, USER-COLVARS) - Support for NVIDIA GPUs up to compute capabilities of 7.0 - MedeA GIBBS - GIBBS 9.7.3 - Ability to start a single-phase simulation from a pre-built initial configuration - Extended, and fully automated, Pivot move control Property Modules - Brand new Deformation Module to apply systematic stresses and strains to atomic models in a defined manner - Molecular Descriptors: addition of new molecular descriptors facilitating correlative model creation - Brand new UNIFAC capability for vapor-liquid equilibria simulation based on correlations Forcefields - Extension of nonbond interactions in frc files to handle defined pair-interactions instead of using mixing rule (LAMMPS) - New Mesoscale Forcefields: - MARTINI - SPICA - pcff+: Forcefield extensions for: - Optimized parameters for Ba (based on BaCO3) - New parameters for divalent Mg and Sr cations - Improved parameterization of urea - Extensions for -OCH3 terminated oligo-ethyleneglycols - EAM: - Combination of Morse Forcefield with Streitz-Mintmire charge equilibration - TraPPE-UA+ Flowcharts: - Subset Manager stage: providing the ability to create a subset in a flowchart - Flowchart Library: several updates to existing flowcharts and addition of new flowcharts Analysis Tools: - Optical Spectra: - Display of blackbody radiation as a function of frequency - Spectral emissivity - Total emissivity as a function of temperature - CIE 1931 and 1964 color spaces upon reflection and transmission, now both for spectral power distribution of Standard Illuminant D65 and of fluorescent lamp FL2 MedeA's JobServer & TaskServer & Maintenance: - Update of maintenance program (efficiency and robustness improvements) - Ability to install fully from command line

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